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Mark Oldakowski

Chief Operating Officer at Bionano GenomicsBionano Genomics
Executive

About Mark Oldakowski

Mark Oldakowski is Chief Operating Officer (COO) of Bionano Genomics and has served in this role since November 2017. He holds a B.S. in Electrical Engineering and an M.S. in Computer and Systems Engineering from Rensselaer Polytechnic Institute . Age: 51 . Company performance context during his tenure: FY2024 revenue was $30.8M vs. $36.1M in FY2023 (-15% YoY) ; Q4 2024 GAAP gross margin improved to 42% from 23% in Q4 2023 . Pay-versus-performance disclosure shows company TSR value of $0.96 on a $100 base for 2024 (measured from 12/31/2021) and a net loss of $112.0M in 2024 .

Past Roles

OrganizationRoleYearsStrategic impact
Bionano GenomicsCOO (previously VP, Product Development & Operations)COO since Nov 2017; VP since Oct 2014Scaled operations/product development for OGM platform
Brooks Life Science Systems (Azenta Life Sciences)Senior Director of Engineering and Chief Product OfficerDec 2011–Aug 2014Led engineering/product for automation and cryogenic solutions
Affymetrix (now Applied Biosystems)Director of EngineeringApr 2009–Oct 2011Directed engineering for life science systems
Siemens Healthcare DiagnosticsSenior Manager and Core Team Leader, R&DDec 2007–Apr 2009R&D leadership for diagnostics systems
Applied Biosystems (part of Thermo Fisher)Various roles~1994–2007 (prior 13 years to 2009)Developed sequencing and real-time PCR systems

External Roles

  • No public company directorships or external board roles disclosed for Mr. Oldakowski .

Fixed Compensation

Metric (USD)20232024
Base salary$459,231 $460,000
Performance-based bonus paid$0 $0 (no performance bonuses paid)
One-time retention bonus$121,757 (paid upon CPT I code establishment)
All other comp (401k match + life insurance)$13,680 $15,042
2024 Target Bonus OpportunityPercent of Base Salary
COO annual target bonus55% (unchanged from 2023)

Notes:

  • 401(k) employer match suspended company-wide as of Dec 1, 2024 .
  • Compensation philosophy targets ~50th percentile of peer group; peer group list disclosed (e.g., 908 Devices, Absci, Quanterix, Seer) .

Performance Compensation

IncentiveMetric/TriggerTargetActual/PayoutVesting/Timing
Annual performance cash bonus (2024)Company/corporate objectives; principal goal was options to allow company to continue operations55% of base salary 0% payout for NEOs for 2024 N/A
One-time retention cash bonus (2024)Establishment of new Category I CPT code for OGM (hematologic malignancies)N/A$121,757 paid in June 2024 upon CPT I code establishment Paid June 2024
Annual equity (2024) – OptionsLong-term value creation; time-based1,250 optionsGranted; strike $55.80Vests monthly over 48 months from grant; expires 6/2/2034
Annual equity (2024) – RSUsLong-term value creation; time-based266 RSUsGranted25% at 1-year anniversary; annually over next 3 years

Program governance and risk:

  • No 2024 performance-based non-equity bonuses were paid to NEOs .
  • Clawback policy implemented in compliance with Dodd-Frank; Sarbanes-Oxley Section 304 applicable to CEO/CFO .

Equity Ownership & Alignment

Ownership detailValue
Shares owned directly468
Securities exercisable within 60 days (as of Apr 14, 2025)2,853 (stock options)
Total beneficial ownership3,321 shares; <1% of outstanding
Unvested RSUs outstanding (12/31/2024)266 (2024 grant) + 167 (9/11/2023) + 167 (2/15/2023) = 600 RSUs (market value $4,601 for the 266 RSUs at $17.30)
Hedging/PledgingCompany prohibits hedging and pledging/margin of company stock

Vested vs unvested/option moneyness:

  • As of 12/31/2024, numerous option tranches remain unexercisable (examples below). With the stock at $17.30 on 12/31/2024, all listed option strikes (e.g., $55.80, $180.00, $978.00, $1,308.00, $4,698.00) are deeply out-of-the-money, indicating low near-term exercise/selling pressure from options .

Selected outstanding equity awards (Oldakowski)

Grant typeGrant dateExercisableUnexercisableStrikeExpiration
Stock Option6/3/20241561,093$55.806/2/2034
RSU6/3/202426625% at 1-year; annually thereafter
Stock Option9/18/2023204461$180.009/17/2033
RSU9/11/202316750% on each of first and second anniversaries
Stock Option2/15/2023418514$978.002/14/2033
RSU2/15/202316725% at 1-year; annually thereafter
Stock Option2/15/2022762321$1,308.002/14/2032
Stock Option4/1/202141741$4,698.003/31/2031

Insider trading/filing:

  • Section 16(a) late Form 4 filing: report dated March 5, 2024 for a transaction on Feb 15, 2024 (administrative delay), including Mr. Oldakowski .

Employment Terms

TermDetail
Employment statusAt-will (employment agreement dated Nov 7, 2017)
Severance (without cause)6 months of base salary + health coverage premiums for up to 6 months (earlier of new eligibility) subject to release
Change-in-controlNo explicit double-trigger cash multiple disclosed for COO; equity acceleration governed by plan/award terms (2018 Plan allows Board/administrator discretion; no automatic acceleration)
Benefits/perquisitesMedical/dental/vision, life/disability, 401(k) (match suspended as of Dec 1, 2024)

Governance, Pay Practices, and Shareholder Signals

  • Compensation Committee members: Barker (Chair), Vuori, Mamuszka; independent; Pearl Meyer serves as independent compensation consultant .
  • Compensation framework targets ~50th percentile vs. life sciences tools/diagnostics peer group; enhanced disclosure of peer group provided .
  • Hedging/pledging prohibited for all insiders .
  • Say-on-pay support: ~83.4% approval at 2024 annual meeting; at the 2025 annual meeting, votes were 375,470 For / 328,513 Against / 9,636 Abstain (indicating tightened support) .

Operating Performance Context (for incentive alignment)

Metric20232024
Total revenue$36,116,000 $30,776,000
Product revenue$26,727,000 $27,008,000
GAAP gross margin (Q4)23% 42%
Net loss$(232,493,000) $(112,017,000)
OGM systems installed (year-end)326 371
Flowcells sold26,444 30,307

Company-wide cost actions and milestones:

  • CEO cited approximately $100M annualized operating cost reductions since May 2023; company regained Nasdaq minimum bid compliance after a 1-for-60 reverse split effective Jan 22, 2025 .

Compensation Structure Analysis

  • Shift toward cash retention over performance bonuses in 2024: no annual performance bonuses were paid; a one-time retention bonus was tied to achieving CPT I code for OGM, improving near-term operational incentives but reducing strict pay-for-performance linkage to financial metrics .
  • Significant reduction in grant-date fair value of equity awards YoY for the COO (Stock awards: $265.4k in 2023 vs. $14.8k in 2024; Option awards: $146.5k in 2023 vs. $51.7k in 2024), consistent with cost containment and market conditions .
  • Equity awards are predominantly time-based (2024 mix ~70% options/30% RSUs for NEOs), with no 2024 PSUs for the COO disclosed; this lowers performance sensitivity but supports retention .

Risk Indicators & Red Flags

  • Going concern and financing risk highlighted at company level (not executive-specific) in 2025 disclosures; continued need for capital to execute strategy .
  • Tightening say-on-pay support in 2025 suggests heightened investor scrutiny of pay-for-performance alignment .
  • Hedging/pledging prohibitions and deeply out-of-the-money option strikes reduce near-term insider selling pressure .

Say-on-Pay & Shareholder Feedback

  • 2024 say-on-pay approval ~83.4%, up from ~53% the prior year; the company cited enhanced disclosure and engagement .
  • 2025 annual meeting results: Say-on-pay For 375,470; Against 328,513; Abstain 9,636 (indicates more mixed support versus 2024) .

Compensation Peer Group (benchmarking)

  • Peer group included life-science tools/diagnostics firms such as 908 Devices, Absci, Quanterix, Seer, etc.; used to target ~50th percentile pay positioning .

Investment Implications

  • Alignment: Oldakowski’s equity is largely time-based and deeply out-of-the-money, indicating retention-focused design with limited near-term monetization; RSU vesting is modest (600 RSUs outstanding at 12/31/24), limiting selling pressure . Prohibition on hedging/pledging supports alignment with long-term shareholders .
  • Pay-for-performance: 2024 pay emphasized a one-time operational milestone (CPT I code) rather than financial outcomes; zero performance bonus payout and reduced equity grant values reflect cost discipline but weaken direct linkage to revenue/profit metrics .
  • Retention risk: Six-month severance without explicit CIC acceleration for the COO, coupled with reduced equity grant value, suggests manageable but non-trivial retention risk in a turnaround context; however, time-vested awards and a clear operational milestone payout help stabilize tenure .
  • Trading signals: With options far OTM and limited RSU vesting, insider selling pressure from the COO appears low. A late Section 16 filing in early 2024 was administrative and not indicative of systematic selling .
  • Execution risk: Company-level metrics show revenue contraction in 2024 but improved Q4 gross margins and installed base growth. Sustained operational improvements (cost reductions, reimbursement milestones) are key to re-establishing financial performance alignment with incentives .