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Nkarta, Inc. (NKTX)·Q3 2025 Earnings Summary

Executive Summary

  • Nkarta reported Q3 2025 net loss of $21.7M and diluted EPS of $0.29, a modest beat versus Wall Street consensus EPS of -$0.303, aided by higher “Other income” while operating expenses were broadly stable quarter-over-quarter .*
  • Clinical execution improved: FDA-cleared protocol changes eliminated patient-by-patient stagger, enabled parallel dosing within cohorts, and enrollment began in the second dose-escalation cohort; complete B-cell depletion observed with fludarabine + cyclophosphamide versus partial depletion with cyclophosphamide alone .
  • Guidance on initial clinical data timing shifted from “second half of 2025” to “medical conference in 2026,” extending the near-term catalyst timeline .
  • Cash, cash equivalents, restricted cash, and investments were $316.5M at quarter-end, with runway into 2029, supporting continued trial execution despite the timeline push .

What Went Well and What Went Wrong

What Went Well

  • Enrollment efficiency and dose escalation improved after FDA engagement; a combined iDSMB now guides dose decisions and patient stagger was removed, allowing simultaneous dosing per cohort: “strengthens the efficiency of our trial enrollment” .
  • Deeper pharmacodynamic effect: “complete B-cell depletion in all patients treated to date” with fludarabine + cyclophosphamide lymphodepletion versus partial depletion on cyclophosphamide alone .
  • Strong liquidity: $316.5M in cash and investments at 9/30, with runway “into 2029,” providing resilience to extend trials and reach clinical milestones .

What Went Wrong

  • Catalyst timing deferred: preliminary data previously guided for H2’25 was updated to presentation in 2026, pushing the timeline for potential value inflections .
  • Continued losses typical of clinical-stage biotech: net loss of $21.7M and absence of reported revenue line items (operating loss equals total operating expenses), highlighting reliance on financing and non-operating income .
  • Interest income fell year-over-year in Q3 ($3.852M vs $5.453M), partially offset by higher other income (expense), net, but still reflecting pressure as cash balances decline with spend .

Financial Results

Quarterly P&L and Cash (oldest → newest)

MetricQ1 2025Q2 2025Q3 2025
Net Loss ($USD Millions)$31.983 $22.977 $21.715
Diluted EPS ($USD)-$0.43 -$0.31 -$0.29
R&D Expense ($USD Millions)$24.2 $20.8 $20.2
G&A Expense ($USD Millions)$12.4 (incl. $5.1M restructuring) $6.4 $7.1
Total Operating Expenses ($USD Millions)$36.564 $27.186 $27.286
Interest Income ($USD Millions)$4.376 $3.970 $3.852
Other Income (Expense), Net ($USD Millions)$0.205 $0.239 $1.719
Total Other Income, Net ($USD Millions)$4.581 $4.209 $5.571
Cash & Investments at Period End ($USD Millions)$351.901 $334.041 $316.495
Weighted Avg Shares (Basic & Diluted)73,916,477 73,977,625 74,024,543

Q3 Year-over-Year Comparison

MetricQ3 2024Q3 2025
R&D Expense ($USD Millions)$25.250 $20.198
G&A Expense ($USD Millions)$8.544 $7.088
Total Operating Expenses ($USD Millions)$33.794 $27.286
Interest Income ($USD Millions)$5.453 $3.852
Other Income (Expense), Net ($USD Millions)-$0.003 $1.719
Total Other Income, Net ($USD Millions)$5.450 $5.571
Net Loss ($USD Millions)$28.344 $21.715
Diluted EPS ($USD)-$0.39 -$0.29
Weighted Avg Shares73,563,316 74,024,543

Estimates vs Actuals (Q3 2025)

MetricConsensus (S&P Global)Actual
Primary EPS-$0.30333*-$0.29
Primary EPS - # of Estimates3*
Revenue$0.00*Not disclosed; no revenue line item reported in condensed statements
Revenue - # of Estimates5*

Values retrieved from S&P Global.*

KPIs and Operational Metrics

KPIQ3 2025 Detail
Dose EscalationEnrollment underway in second dose-escalation cohort
Dosing ModeParallel dosing allowed within each dose level; patient-by-patient stagger removed
Lymphodepletion RegimenFludarabine + cyclophosphamide (or cyclophosphamide alone for eligible cytopenic patients)
B-cell Depletion OutcomeComplete B-cell depletion observed with dual regimen vs partial with cyclophosphamide alone
iDSMBCombined iDSMB overseeing Ntrust-1 and Ntrust-2 dose escalation
Dosing ScheduleNKX019 on Days 0, 3, 7 per cycle; no supplemental cytokines/antibody therapeutics
Investigator-Sponsored TrialsTwo (myasthenia gravis; systemic lupus erythematosus)

Guidance Changes

MetricPeriodPrevious GuidanceCurrent GuidanceChange
Initial NKX019 Data TimingNtrust trials“Preliminary data in H2 2025” “Initial data to be presented at a medical conference in 2026” Lowered (timing deferred)
Cash RunwayOperating plan“Into 2029” “Into 2029” Maintained
Lymphodepletion StrategyPlatformModified to include fludarabine + cyclophosphamide (option for cyclophosphamide alone) Maintained; dual regimen highlighted with stronger B-cell depletion Maintained (with positive PD confirmation)
Enrollment ProcessNtrust-1 & Ntrust-2Standard approach; no combined iDSMB noted Combined iDSMB; stagger removed; parallel dosing permitted Raised (process acceleration)

Earnings Call Themes & Trends

(Transcript unavailable in our document set; trends derived from Q1–Q3 press releases.)

TopicPrevious Mentions (Q1 & Q2)Current Period (Q3)Trend
Clinical Data TimingQ1/Q2: preliminary data in H2 2025 Presentation targeted for 2026 Pushed out
Lymphodepletion RegimenQ1: modified to fludarabine + cyclophosphamide introduced ; Q2: continued option set Demonstrated complete B-cell depletion with dual regimen Strengthening PD signal
Enrollment Speed / GovernanceLimited prior detailCombined iDSMB; stagger removed; parallel dosing Accelerating
Cash RunwayInto 2029 reiterated Into 2029 reiterated Stable
Safety Profile / TolerabilityNot emphasized“Underscores the consistency of NKX019’s emerging safety profile” Emerging positive
R&D Execution / Org ChangesQ1 restructuring (+runway) ; Q2 new CMO appointment “Disciplined clinical execution” highlighted Operational focus sustained

Management Commentary

  • “Following productive engagement with the FDA, we streamlined enrollment across our Ntrust-1 and Ntrust-2 clinical trials under a combined iDSMB… removal of a patient-by-patient stagger… strengthens the efficiency of our trial enrollment and underscores the consistency of NKX019’s emerging safety profile.” — Paul J. Hastings, CEO .
  • “With the modification of our lymphodepletion regimen… we are now seeing complete B-cell depletion in all patients treated to date… compared with partial B-cell depletion observed with patients receiving cyclophosphamide alone.” — Paul J. Hastings, CEO .
  • “We plan to present data… at a medical conference in 2026… With a strong balance sheet projected to fund operations into 2029, we are now poised to meaningfully advance our clinical program in this challenging capital environment.” — Paul J. Hastings, CEO .

Q&A Highlights

  • An earnings call transcript was not available in our document set or Nkarta’s IR page for Q3 2025; this recap relies on press releases for narrative and clarifications .

Estimates Context

  • EPS modestly beat consensus by ~$0.013 (actual -$0.29 vs -$0.303), reflecting slightly higher total other income and stable operating expense levels .*
  • Revenue consensus was $0.00; the company did not disclose a revenue figure and reported no revenue line item in condensed statements, consistent with clinical-stage status .*
  • Given the timing shift to 2026 for initial data, near-term estimates may need to reflect fewer imminent clinical catalysts and extended timelines for potential de-risking .*

Values retrieved from S&P Global.*

Key Takeaways for Investors

  • Protocol and governance changes (combined iDSMB; no stagger; parallel dosing) should accelerate trial throughput, potentially compressing timelines within dose escalation despite the shift in external data presentation to 2026 .
  • Pharmacodynamic signal strengthened: complete B-cell depletion with dual lymphodepletion increases confidence in mechanism-of-action for B-cell–driven autoimmune diseases .
  • Liquidity remains a strategic advantage (runway into 2029), allowing disciplined execution without near-term financing overhang, despite ongoing operating losses typical of clinical-stage biotechs .
  • Near-term stock narrative likely pivots to operational cadence (cohort progress, enrollment rates) rather than major data catalysts in 2025; watch investor conference commentary and IR events for incremental updates .
  • EPS beat was minor; financial trajectory driven by operating spend and other income; watch quarterly cash burn and any shifts in interest income as cash balances step down .
  • The H2’25 → 2026 data timing update is a negative for immediate catalysts; however, the improved enrollment mechanics and PD signal can offset sentiment if execution remains consistent .
  • Key upcoming signals: confirmation of safety consistency at higher doses, enrollment velocity in cohort 2, and any indications of early clinical response measures shared at medical meetings .